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Home » Recipes » Breakfast & Brunch » Muffins

Vegan Double Chocolate Flaxseed Muffins

No OilVegan

Published: Feb 18, 2019 · Modified: Mar 17, 2025 by Debra Klein · This post may contain affiliate links · 27 Comments

Jump to Recipe

Vegan Double Chocolate Muffins are everything they’re hyped up to be. Chocolate. Double Chocolate…with chocolate chips…in a muffin!

They’re vegan, but you’d never guess because they’re moist and fluffy and decadently rich…ooey and gooey…but certainly not cloyingly sweet. Just a touch of maple syrup to balance out the pumpkin and flaxseed. We’re talking a whole can of pumpkin….cuz we all know what happens to that little bit extra not called for in the recipe…nada! Ok…these Vegan Chocolate Chocolate Chip Muffin with flaxseeds and pumpkin…they’re a must make. STAT!

Chocolate chocolate chip muffins cooling on a wire rack.
Jump to:
  • Ingredients
  • How to make them
  • Debra’s Pro Tips
  • 📖 Recipe

Ooh….if you’re looking for a super easy, pantry ingredient vegan breakfast muffin, you are in the right place! Chocolate lovers unite over this double chocolate glorious breakfast muffin…though if you were interested in veggies for breakfast, maybe you’d prefer a batch of my vegan zucchini muffins…options are good!

Ingredients

Ingredients for double chocolate muffins: flour, maple syrup, applesauce, vinegar, cacao, flaxseeds, pumpkin puree, almond milk.

Pantry staples like flour, flax, pumpkin puree, maple syrup make up the bulk of this easy muffin recipe. Applesauce helps with sweetness and the apple cider vinegar gives the baking powder and baking soda a boost to help these rise!

How to make them

Preheat oven to 325 convection or 350 regular bake. Line muffin tins with unbleached parchment paper liners.

Flour, ground flax, cacao powder, baking powder, baking soda and salt in a bowl.

Gather all purpose flour (gluten-free will work too), ground flax, cacao powder, baking powder, baking soda and salt into a medium sized mixing bowl.

Chocolate powdery dry ingredients mixed together in a glass bowl.

Stir dry ingredients together until uniformly mixed.

Pumpkin, applesauce, maple syrup and almond milk in a glass bowl.

In a separate bowl, combine pumpkin, applesauce, maple syrup and almond milk. Mix until thoroughly combined.

Chocolate powdery dry ingredients plus pumpkin mixture in a glass mixing bowl.

Pour the wet ingredients into the dry and use a spatula to mix until just combined.

Chocolate muffin batter in a glass mixing bowl.

You’ll have to pull up the flour mixture from the bottom of the bowl to be sure it’s well incorporated, but resist the urge to overmix.

Chocolate muffin batter plus chocolate chips in a glass mixing bowl.

Gently fold in the chocolate chips, being careful not to collapse the muffin batter.

Scooping chocolate chocolate chip muffin batter into parchment lined muffin tins.

Scoop into parchment lined muffin tins, continuing to fill until all the batter has been evenly dispersed.

Double chocolate chocolate chip muffins in the baking tin.

Bake in preheated oven for 22 minutes, until a toothpick inserted comes out clean.

Close up of a chocolate chocolate chip Muffin in the tin.

Remove carefully from oven and allow to cool slightly. Any chocolate chips on the top will be super gooey and hot to the touch.

Nicely risen chocolate chocolate chip muffin cooling on a wire rack.

Gently transfer to a wire rack to continue to cool. If left in the muffin tins, they will continue to cook.

Debra’s Pro Tips

  • The combination of baking powder, baking soda and apple cider vinegar will help these vegan muffins rise. Resist the urge to over-mix and deflate them.
  • If you’re able to resist the urge to eat them right away, the paper liners peel off more easily once they’ve had a chance to cool.
  • Cool completely and then store in an airtight container….they’ll stay good at room temperature for 5 days, in the fridge for 2 weeks, or freeze for 3 months.

Did you know commenting and rating recipes is one of the best ways to support your favorite food bloggers? If you made this recipe, please consider a five star rating below and leave a comment. Also, please share your photos on instagram by tagging me @dkhealthcoach and using the hashtag #debraklein

📖 Recipe

Double chocolate chocolate chip muffin, close up.

Vegan Double Chocolate Flaxseed Muffins

Author: Debra Klein
These Vegan Chocolate Chocolate Chip Muffins and moist and fluffy, decadent and delicious. They're made with flaxseed and pumpkin, cacao powder and lightly sweetened with maple syrup and applesauce…..double chocolate muffins for breakfast? You bet!
4.86 from 14 votes
Rate this Recipe
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Prep Time 10 minutes mins
Cook Time 22 minutes mins
Total Time 32 minutes mins
Course Breakfast & Brunch
Cuisine American
Servings 12 muffins
Calories 226 kcal

Equipment

  • muffin tin
  • parchment muffin liners
  • Glass Mixing Bowls with Lids
  • Cookie scoop set

Ingredients
  

  • 3 cups all purpose flour
  • ⅓ cup cacao powder
  • ½ cup ground flax seeds
  • 1 teaspoon baking soda
  • 1 teaspoon baking powder
  • ¼ teaspoon sea salt
  • 1 15-oz can pumpkin puree
  • ⅓ cup maple syrup
  • ½ cup unsweetened apple sauce
  • ½ cup almond milk
  • 1 tblsp apple cider vinegar
  • ½ cup dark chocolate chips

Instructions
 

  • Preheat oven to 325 convection or 350 regular bake. Line muffin tin with unbleached parchment liners.
  • In a medium sized mixing bowl, combine dry ingredients.
  • In a separate bowl, mix together pumpkin, syrup, applesauce and almond milk.
  • Pour wet ingredients into dry and mix until thoroughly combined, pulling up the flour mixture from the bottom of the bowl.
  • Gently stir in chocolate chips.
  • Fill muffin tins generously, until batter has been evenly distributed into the 12 muffin tins.
  • Bake in preheated oven for 22 minutes, until toothpick comes out clean.
  • Store muffins in an airtight container. At room temperature for 5 days. In the refrigerator for 2 weeks, or freeze for 3 months.

Nutrition

Calories: 226kcalCarbohydrates: 39gProtein: 6gFat: 6gSaturated Fat: 3gPolyunsaturated Fat: 2gMonounsaturated Fat: 1gCholesterol: 0.1mgSodium: 201mgPotassium: 200mgFiber: 4gSugar: 9gVitamin A: 17IUVitamin C: 0.2mgCalcium: 90mgIron: 2mg
Note

The nutrition calculations were done using online tools. To obtain the most accurate representation of the nutritional information in any given recipe, you should calculate the nutritional information with the actual ingredients you used. You are ultimately responsible for ensuring that any nutritional information is accurate, complete and useful.

Did you make this recipe? Please leave a review below, then snap a picture and tag me @dkhealthcoach or use hashtag #dkhealtcoach on Instagram so I can see it!!

Categories

MuffinsNo OilShabbatVegan

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Reader Interactions

Comments

    4.86 from 14 votes (2 ratings without comment)

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    Recipe Rating




  1. Gloria

    February 19, 2019 at 10:56 pm

    5 stars
    Well, you can never go wrong with a HEALTHY muffin, especially chocolate. We are having a sleepover in the next couple of weeks. I will be a very special gramma if I serve these for breakfast for sure.

    Reply
  2. Julie Menghini

    February 20, 2019 at 10:40 pm

    5 stars
    This muffin is right up my alley and I can’t wait to try them. I always use arrowroot powder for thickening sauces instead of using creams but have never used it in baking so I’ll be trying that and like you, always have sugar-free applesauce. I love to serve muffins with soups and it’s definitely soup weather and it’s always chocolate weather, right?

    Reply
  3. Debra Klein

    February 20, 2019 at 9:05 pm

    Haha….definitely the perfect weather for soup and chocolate…though I probably would eat them separately!

    Reply
  4. Debra Klein

    February 20, 2019 at 9:06 pm

    I think you’re a special gramma regardless….always dreaming up fun food to make with the kids!!

    Reply
  5. Trish Bozeman

    February 21, 2019 at 3:52 pm

    5 stars
    These sound AMAZING! Perfect for a stay in jammies kinda day and I could let my toddler eat a few and not feel at all bad about it. Gotta try these!

    Reply
  6. Debra Klein

    February 21, 2019 at 9:39 pm

    Yes. Yes and Yes! Your toddler will love them, as will you!

    Reply
  7. Tracy

    February 24, 2019 at 10:46 pm

    5 stars
    These were soooo good! And I love how good for us we are and my toddler loved them so much. I love snacks that she loves that I know are sooo good for her! Thank you!

    Reply
  8. Debra Klein

    February 24, 2019 at 8:02 pm

    This warms my heart so much! That’s my goal…to inspire healthy choices that are tasty too! Thank you for making and letting me know.

    Reply
  9. Charity

    February 25, 2019 at 3:12 am

    5 stars
    For a second there I thought healthy was going to mean bananas… when I see “healthy” in smoothies or baked goods it almost always involves bananas and I really can’t stand them. So glad to see pumpkin puree instead! Pumpkin and chocolate are delicious together. Really excited to make these muffins!

    Reply
  10. Annemarie

    February 25, 2019 at 3:27 am

    5 stars
    There is nothing like a stay in your jammies and not mess up the kitchen sort of treat! Clean ingredients (and plenty of chocolate!) makes these muffins even better. They’re perfect for getting my teen to eat something healthy while giving her the feeling of having a treat.

    Reply
  11. Debra Klein

    February 25, 2019 at 12:08 am

    Super popular choice among the moms of teens for exactly that reason!

    Reply
  12. Debra Klein

    February 25, 2019 at 12:09 am

    I agree..the other day I went to make a batch of these and didn’t have any pumpkin, so I subbed bananas and my daughter said “too banana tasting” what happened to the other recipe?

    Reply
  13. Dana

    February 25, 2019 at 4:30 pm

    5 stars
    It’s a great day when you can put “healthy” and “chocolate” in the same sentence 🙂
    These are incredible. Maple syrup is my favorite natural sweetener (must be the Canadian in me). And that punch of fiber with the flax is straight up awesome.

    Reply
  14. Debra Klein

    February 25, 2019 at 1:32 pm

    Couldn’t agree more…I’m all about balance that way. No reason healthy and chocolate can’t go together!!

    Reply
  15. Traci

    February 25, 2019 at 5:36 pm

    5 stars
    Great recipe…LOVE it that they’re refined sugar free! I’m always looking for staple muffins that are also not loaded with butter. Thanks for sharing this winner!

    Reply
  16. Debra Klein

    February 25, 2019 at 1:37 pm

    You’re welcome! I also appreciate recipes with those criteria and they’re hard to find…which is why I create what I do.

    Reply
  17. Annissa

    February 25, 2019 at 6:19 pm

    5 stars
    Wow! You’ve loaded these muffins with good stuff! I love the addition of pumpkin which adds some beta-carotene in with all of the antioxidants from the chocolate. I’m a big fan of the health benefits of chocolate, but not so much a fan of the sugar that is in most chocolate treats. You’ve found a perfect solution!

    Reply
  18. Debra Klein

    February 25, 2019 at 2:20 pm

    I thought so too. Thank you!

    Reply
  19. Marisa F. Stewart

    February 25, 2019 at 4:24 pm

    After the day I’ve had I would like a dozen. Eating chocolate into oblivion. Those muffins look so good and moist and I love that they aren’t bad for you. The addition of pumpkin is almost like a secret nutritious ingredient that packs the goodies with good for you vitamins. I’ll make these for my grandsons, for sure.

    Reply
    • Debra Klein

      February 25, 2019 at 5:21 pm

      Yes…to all of that. The pumpkin is what makes them so moist without having to add more fat!

      Reply
  20. Marisa F. Stewart

    February 25, 2019 at 8:24 pm

    5 stars
    After the day I’ve had I would like a dozen. Eating chocolate into oblivion. Those muffins look so good and moist and I love that they aren’t bad for you. The addition of pumpkin is almost like a secret nutritious ingredient that packs the goodies with good for you vitamins. I’ll make these for my grandsons, for sure.

    Reply
  21. Jess

    April 17, 2019 at 1:52 pm

    Made these and loved them! Just wanted to point out that it says 1/4 cup of sea salt, lol. I thought better of it and did 1/4 teaspoon, but just thought you may want to correct!

    Reply
    • Debra Klein

      April 17, 2019 at 4:48 pm

      Thank you for catching that typo! Just fixed it. So many don’t actually see what’s there, but what they assume is there. One of my favorites, glad you enjoyed them.

      Reply
  22. Judy Wilson

    August 21, 2019 at 5:01 pm

    5 stars
    LOVE these!!! I make these on the repeat. They are a great, quick, snack for when you just need some chocolate without the guilt! Thank you very much😊

    Reply
  23. Debra Klein

    August 21, 2019 at 1:22 pm

    You’re welcome. I make them on the repeat as well.

    Reply
  24. Amber

    October 14, 2025 at 11:09 am

    5 stars
    Mine didn’t rise at all, but they were still very yummy. I mixed by hand gently, but oh well. I think the dough is just too heavy to really rise much. Perfect amount of sweetness. I love that it uses a whole can of pumpkin! No need to try and figure out how to use any remaining canned pumpkin.

    Reply
    • Debra Klein

      October 14, 2025 at 2:39 pm

      I’m glad you liked them…I agree, it is a heavy dough, and mine don’t rise a lot…but I do get a bit of a rise making them less dense….I also mix by hand.

      Reply

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Photo of Debra Klein in the kitchen, smiling, tossing a salad.

Hi, I’m Debra, Holistic Health Coach and Culinary Instructor inspiring healthy choices with seasonal plant-based recipes. I'm also passionate about transforming Traditional Jewish Foods into dishes that are nutritious, delicious, beautiful and satisfying. Let's get into the kitchen and have some fun.

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